HaploX

Fu J, Liu H, Hu J, et al. Five Complete Chloroplast Genome Sequences fromDiospyros: Genome Organization and Comparative Analysis[J]. Plos One, 2016, 11(7).

Chen S, Huang T, Zhou Y, Han Y, Xu M and Gu J, AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for Fastq Data, APBC 2017.

Chen S, Han Y, Guo L, Hu J, Gu J, SeqMaker: A Next Generation Sequencing Simulator with Variations, Sequencing Errors and Amplification Bias Integrated, IEEE BIBM 2016.

Shifu Chen, Yue Han, Lanting Guo, Jingjing Hu, Jia Gu. SeqMaker:A Next Generation Sequencing Simulator with Variations, Sequencing Errors and Amplification Bias Integrated. IEEE International Conference on Bioinformatics and Biomedicine, 2016.

Shifu Chen, Jin Qin, Yongming Xie, Junping Zhao and Pheng-Ann Heng. An Efficient Sorting Algorithm with CUDA, Journal of the Chinese Institute of Engineers, Volume 32, No. 7 pp: 915-922

Shifu Chen, Ming Liu, Xiaoni Zhang, et al (2016) ; A study of cell-free DNA fragmentation pattern and its application in DNA sample type classification.(review)

Jun Li, …,et al. (2012) The Development of Cancer Genome Research and its Clinical Opportunity brought by Next Generation Sequencing. Human health & informatics.

Xuan Zhang,…,Jun Li, et al. (2015) The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nature Medicine.

Wu Y, Cheng T, Liu C, Liu D, Zhang Q, Long R, Zhao P, Xia Q. Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori. PLoS One. 2016 Jan 15;11(1):e0147147.

Cheng T, Fu B, Wu Y, Long R, Liu C, Xia Q. Transcriptome sequencing and positive selected genes analysis of Bombyx mandarina. PLoS One. 2015 Mar 25;10(3):e0122837.

Hao Liu, Yuduan Ding, Yanqing Zhou, …, et al.CRISPR-P 2.0: an improved CRISPR-Cas9 tool for genome editing in plants. Molecular Plant.

Ji-wei Chang, Yan-Qing Zhou, … et al. Prediction of Protein-Protein Interactions by Evidence Combining Methods. Molecular Biology and Biophysics.

Tian, C., Zhang, X., He, J., Yu, H., Wang, Y., Shi, B., Han, Y., Wang, G., Feng, X., Zhang, C., Wang, J., Qi, J., Yu, R. and Jiao, Y. (2014) An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol. 10: 755.

Ruilian Xu, Guolin Zhong, Tanxiao Huang, Wan He, Cheng Kong, Xiaoni Zhang, Ying Wang, Ming Liu, Mingyan Xu, Shifu Chen. Sequencing of circulating tumor DNA for dynamic monitoring of gene mutations in advanced non-small cell lung cancer. Oncology Letters, 2018. https://doi.org/10.3892/ol.2018.7808

Xiao Sun, Tanxiao Huang, Fangsheng Cheng, Kaibing Huang, Ming Liu, Wan He, Mingwei Li, Xiaoni Zhang, Mingyan Xu, Shifu Chen, Ligang Xia. Monitoring colorectal cancer following surgery using plasma circulating tumor DNA. Oncology Letters, 2018, https://doi.org/10.3892/ol.2018.7837

Shifu Chen, Tanxiao Huang, Tiexiang Wen, Hong Li, Mingyan Xu and Jia Gu. MutScan: fast detection and visualization of target mutations by scanning FASTQ data.BMC Bioinformatics, 2018; https://doi.org/10.1186/s12859-018-2024-6